Aligns sequences using T_COFFEE
meta
Groovy Map containing sample information e.g. [ id:'test']
[ id:'test']
fasta
Input sequences in FASTA format
*.{fa,fasta}
meta2
Groovy Map containing tree information e.g. [ id:'test_tree']
[ id:'test_tree']
tree
Input guide tree in Newick format
*.{dnd}
meta3
Groovy Map containing tree information e.g. [ id:'test_infos']
[ id:'test_infos']
template
T_coffee template file that maps sequences to the accessory information files to be used.
*
accessory_informations
Accessory files to be used in the alignment. For example, it could be protein structures or secondary structures.
alignment
Alignment file.
*.{aln}
versions
File containing software versions
versions.yml
A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.
