Description

Compares 2 alternative MSAs to evaluate them.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, … ]

msa:file

fasta file containing the alignment to be evaluated. Can be gzipped or uncompressed

*.{aln,fa,fasta,fas}{.gz,}

ref_msa:file

fasta file containing the reference alignment used for the evaluation. Can be gzipped or uncompressed

*.{aln,fa,fasta,fas}{.gz,}

Output

name:type
description
pattern

scores

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.scores:file

a file containing the score of the alignment

*.scores

versions

versions.yml:file

File containing software versions

versions.yml

Tools

pigz

Parallel implementation of the gzip algorithm.