Compares 2 alternative MSAs to evaluate them.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, … ]
msa
:file
fasta file containing the alignment to be evaluated. Can be gzipped or uncompressed
*.{aln,fa,fasta,fas}{.gz,}
ref_msa
fasta file containing the reference alignment used for the evaluation. Can be gzipped or uncompressed
scores
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.scores
a file containing the score of the alignment
versions_tcoffee
${task.process}
:string
The name of the process
tcoffee
The name of the tool
t_coffee -version | awk '{gsub("Version_", ""); print \$3}'
:eval
The expression to obtain the version of the tool
versions_pigz
pigz
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"
versions
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
Parallel implementation of the gzip algorithm.
