Description

Compares 2 alternative MSAs to evaluate them.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, … ]

msa (file)

fasta file containing the alignment to be evaluated. Can be gzipped or uncompressed

*.{aln,fa,fasta,fas}{.gz,}

ref_msa (file)

fasta file containing the reference alignment used for the evaluation. Can be gzipped or uncompressed

*.{aln,fa,fasta,fas}{.gz,}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

scores (file)

a file containing the score of the alignment

*.scores
included in
multiplesequencealign
maintainers
Github user l-mansouri
Github user luisas
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

pigz

Parallel implementation of the gzip algorithm.

zlib.net/pigz zlib.net/pigz/pigz.pdf