Compares 2 alternative MSAs to evaluate them.
meta
Groovy Map containing sample information e.g. [ id:‘test’, … ]
msa
fasta file containing the alignment to be evaluated. Can be gzipped or uncompressed
*.{aln,fa,fasta,fas}{.gz,}
ref_msa
fasta file containing the reference alignment used for the evaluation. Can be gzipped or uncompressed
Groovy Map containing sample information e.g. [ id:‘test’, single_end
versions
File containing software versions
versions.yml
scores
a file containing the score of the alignment
*.scores
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
Parallel implementation of the gzip algorithm.