Computes the irmsd score for a given alignment and the structures.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, … ]
msa{:bash}
:file
Multiple Sequence Alignment File
meta2{:bash}
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
template{:bash}
Template file
structures{:bash}
Structure file
irmsd{:bash}
${prefix}.irmsd{:bash}
File containing the irmsd of the alignment
versions_tcoffee{:bash}
${task.process}{:bash}
:string
The name of the process
tcoffee{:bash}
The name of the tool
t_coffee -version | awk '{gsub("Version_", ""); print \$3}'{:bash}
:eval
The expression to obtain the version of the tool
versions_pigz{:bash}
pigz{:bash}
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"{:bash}
versions{:bash}
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
Parallel implementation of the gzip algorithm.
