Description

Computes the irmsd score for a given alignment and the structures.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, … ]

msa{:bash}

:file

Multiple Sequence Alignment File

meta2{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

template{:bash}

:file

Template file

structures{:bash}

:file

Structure file

Output

name:type
description
pattern

irmsd{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.irmsd{:bash}

:file

File containing the irmsd of the alignment

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

pigz

Parallel implementation of the gzip algorithm.