Description

Computes the irmsd score for a given alignment and the structures.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, … ]

msa (file)

fasta file containing the alignment to be evaluated. May be gzipped or uncompressed.

*.{aln,fa,fasta,fas}{.gz,}

template (file)

Template file matching the structures to the sequences in the alignment.

*

structures (directory)

Directory containing the structures file matching the sequences in the alignment in PDB format

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

irmsd (file)

File containing the irmsd of the alignment

*
included in
multiplesequencealign
maintainer
Github user luisas
get in touch
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Tools

pigz

Parallel implementation of the gzip algorithm.

zlib.net/pigz zlib.net/pigz/pigz.pdf