modules/tcoffee_seqreformat

Reformats files with t-coffee

reformattingalignmentgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/tcoffee/seqreformat

Description

Reformats files with t-coffee

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test' ]

`infile`
`:file`

Input file to be reformatted

Output

name:type

description

pattern

`formatted_file`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test' ]

`${prefix}.txt`
`:file`

Formatted file

*

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

tcoffee
GPL v3

A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.

http://www.tcoffee.org/Projects/tcoffee tcoffee.readthedocs.io/en/latest/tcoffee_main_documentation https://github.com/cbcrg/tcoffee 10.1006/jmbi.2000.4042

modules/tcoffee_seqreformat

Description

Input

`meta`
`:map`

`infile`
`:file`

Output

`formatted_file`

`meta`
`:map`

`${prefix}.txt`
`:file`

`versions`

`versions.yml`
`:file`

Tools

tcoffee
GPL v3

included in

maintainers

get in touch

modules/tcoffee_seqreformat

Description

Input

meta:map

infile:file

Output

formatted_file

meta:map

${prefix}.txt:file

versions

versions.yml:file

Tools

tcoffee GPL v3

included in

maintainers

get in touch

`meta`
`:map`

`infile`
`:file`

`formatted_file`

`meta`
`:map`

`${prefix}.txt`
`:file`

`versions`

`versions.yml`
`:file`

tcoffee
GPL v3