Description

Parses a Thermo RAW file containing mass spectra to an open file format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

raw (file)

Thermo RAW file

*.{raw,RAW}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

spectra (file)

Mass spectra in open format

*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
included in
mhcquant
maintainer
Github user jonasscheid
get in touch
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Tools

thermorawfileparser
Apache Software

Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono

github.com/compomics/ThermoRawFileParser/blob/master/README.md https://github.com/compomics/ThermoRawFileParser 10.1021/acs.jproteome.9b00328