Description

tidk explore attempts to find the simple telomeric repeat unit in the genome provided. It will report this repeat in its canonical form (e.g. TTAGG -> AACCT).

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

fasta (file)

The input fasta file

*.{fsa,fa,fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

explore_tsv (file)

Telomeres and their frequencies in TSV format

*.tidk.explore.tsv

top_sequence (file)

The most frequent telomere sequence if one or more
sequences are identified by the toolkit

*.top.sequence.txt

versions (file)

File containing software versions

versions.yml
maintainer
Github user GallVp
get in touch
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Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes

github.com/tolkit/telomeric-identifier 10.5281/zenodo.10091385