modules/tidk_plot

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

genomicstelomeresearchplot

https://github.com/nf-core/modules/[...]/modules/nf-core/tidk/plot

Description

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`tsv{:bash}`
`:file`

Search results in TSV format from tidk search

*.tsv

Output

name:type

description

pattern

`svg{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`*.svg{:bash}`
`:file`

Telomere search plot

*.svg

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes

github.com/tolkit/telomeric-identifier 10.5281/zenodo.10091385

modules/tidk_plot

Description

Input

`meta{:bash}`
`:map`

`tsv{:bash}`
`:file`

Output

`svg{:bash}`

`meta{:bash}`
`:map`

`*.svg{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

tidk
MIT

included in

maintainer

get in touch

modules/tidk_plot

Description

Input

meta{:bash}:map

tsv{:bash}:file

Output

svg{:bash}

meta{:bash}:map

*.svg{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

tidk MIT

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`tsv{:bash}`
`:file`

`svg{:bash}`

`meta{:bash}`
`:map`

`*.svg{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

tidk
MIT