modules/tidk_plot

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

genomicstelomeresearchplot

https://github.com/nf-core/modules/[...]/modules/nf-core/tidk/plot

Description

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`tsv`
`:file`

Search results in TSV format from tidk search

*.tsv

Output

name:type

description

pattern

`svg`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`*.svg`
`:file`

Telomere search plot

*.svg

`versions_tidk`

`${task.process}`
`:string`

The name of the process

`tidk`
`:string`

The name of the tool

`tidk --version | sed 's/tidk //'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`tidk`
`:string`

The name of the tool

`tidk --version | sed 's/tidk //'`
`:eval`

The expression to obtain the version of the tool

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes

github.com/tolkit/telomeric-identifier 10.5281/zenodo.10091385

modules/tidk_plot

Description

Input

`meta`
`:map`

`tsv`
`:file`

Output

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions_tidk`

`${task.process}`
`:string`

`tidk`
`:string`

`tidk --version | sed 's/tidk //'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`tidk`
`:string`

`tidk --version | sed 's/tidk //'`
`:eval`

Tools

tidk
MIT

included in

maintainer

get in touch

modules/tidk_plot

Description

Input

meta :map

tsv :file

Output

svg

meta :map

*.svg :file

versions_tidk

${task.process} :string

tidk :string

tidk --version | sed 's/tidk //' :eval

Topics

versions

${task.process} :string

tidk :string

tidk --version | sed 's/tidk //' :eval

Tools

tidkMIT

included in

maintainer

get in touch

`meta`
`:map`

`tsv`
`:file`

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions_tidk`

`${task.process}`
`:string`

`tidk`
`:string`

`tidk --version | sed 's/tidk //'`
`:eval`

`versions`

`${task.process}`
`:string`

`tidk`
`:string`

`tidk --version | sed 's/tidk //'`
`:eval`

tidk
MIT