modules/tidk_plot

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

genomicstelomeresearchplot

https://github.com/nf-core/modules/[...]/modules/nf-core/tidk/plot

Description

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`tsv:file`

Search results in TSV format from tidk search

*.tsv

Output

name:type

description

pattern

`svg`

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1' ]

`*.svg:file`

Telomere search plot

*.svg

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes

github.com/tolkit/telomeric-identifier 10.5281/zenodo.10091385

modules/tidk_plot

Description

Input

`meta:map`

`tsv:file`

Output

`svg`

`meta:map`

`*.svg:file`

`versions`

`versions.yml:file`

Tools

tidk
MIT

included in

maintainer

get in touch

modules/tidk_plot

Description

Input

meta:map

tsv:file

Output

svg

meta:map

*.svg:file

versions

versions.yml:file

Tools

tidk MIT

included in

maintainer

get in touch

`meta:map`

`tsv:file`

`svg`

`meta:map`

`*.svg:file`

`versions`

`versions.yml:file`

tidk
MIT