Description

Plots telomeric repeat frequency against sliding window location using data produced by tidk/search

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

tsv (file)

Search results in TSV format from tidk search

*.tsv

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

svg (file)

Telomere search plot

*.svg

versions (file)

File containing software versions

versions.yml
maintainer
Github user GallVp
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes

github.com/tolkit/telomeric-identifier 10.5281/zenodo.10091385