Description

Searches a genome for a telomere string such as TTAGGG

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

fasta:file

The input fasta file

*.{fsa,fa,fasta}

string:string

Search string such as TTAGGG

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.tsv:file

Search results in TSV format

*.tsv

bedgraph

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.bedgraph:file

Search results in BEDGRAPH format

*.bedgraph

versions

versions.yml:file

File containing software versions

versions.yml

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes