Description

Searches a genome for a telomere string such as TTAGGG

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

fasta (file)

The input fasta file

*.{fsa,fa,fasta}

string (string)

Search string such as TTAGGG

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

tsv (file)

Search results in TSV format

*.tsv

bedgraph (file)

Search results in BEDGRAPH format

*.bedgraph

versions (file)

File containing software versions

versions.yml

Tools

tidk
MIT

tidk is a toolkit to identify and visualise telomeric repeats in genomes