Correct ATAC-seq signal for Tn5 sequence bias with TOBIAS ATACorrect
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam
:file
Coordinate-sorted BAM file
*.bam
bai
BAM index file
*.{bai,csi}
peaks
BED file containing ATAC-seq peaks for bias correction
*.bed
fasta
Reference genome FASTA file
*.{fa,fasta,fna}
corrected
*_corrected.bw
Tn5 bias-corrected ATAC-seq signal track
expected
*_expected.bw
Expected ATAC-seq signal track estimated from Tn5 bias
uncorrected
*_uncorrected.bw
Uncorrected ATAC-seq signal track
bias
*_bias.bw
Tn5 sequence-bias signal track
report
*_atacorrect.pdf
TOBIAS ATACorrect diagnostic PDF
versions_tobias
${task.process}
:string
The name of the process
tobias
The name of the tool
TOBIAS --version
:eval
The expression to obtain the version of the tool
versions
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
