modules/topas_gencons
Create fasta consensus with TOPAS toolkit with options to penalize substitutions for typical DNA damage present in ancient DNA
consensusfastaancient DNA
Description
Create fasta consensus with TOPAS toolkit with options to penalize substitutions for typical DNA damage present in ancient DNA
Input
Name (Type)
Description
Pattern
Gzipped compressed vcf file generated with GATK UnifiedGenotyper containing the called snps
*.vcf.gz
Optional gzipped compressed vcf file generated with GATK UnifiedGenotyper containing the called indels
*.vcf.gz