A post sequencing QC tool for Oxford Nanopore sequencers
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
ontfile
:file
Input ONT file
*.{fastq,fastq.gz,fq,fq.gz,txt,txt.gz,bam}
report_data
*/*.data
Report data emitted from toulligqc
*.data
report_html
*/*.html
Report data in html format
*.html
plots_html
*/images/*.html
Plots emitted in html format
plotly_js
*/images/plotly.min.js
Plots emitted from toulligqc
plotly.min.js
versions_toulligqc
${task.process}
:string
Name of the process
toulligqc
Name of the tool
toulligqc --version
:eval
The expression to obtain the version of the tool
versions
