A post sequencing QC tool for Oxford Nanopore sequencers
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
ontfile{:bash}
:file
Input ONT file
*.{fastq,fastq.gz,fq,fq.gz,txt,txt.gz,bam}
report_data{:bash}
*/*.data{:bash}
Report data emitted from toulligqc
*.data
report_html{:bash}
*/*.html{:bash}
Report data in html format
*.html
plots_html{:bash}
*/images/*.html{:bash}
Plots emitted in html format
plotly_js{:bash}
*/images/plotly.min.js{:bash}
Plots emitted from toulligqc
plotly.min.js
versions_toulligqc{:bash}
${task.process}{:bash}
:string
Name of the process
toulligqc{:bash}
Name of the tool
toulligqc --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
