Description

A post sequencing QC tool for Oxford Nanopore sequencers

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

ontfile:file

Input ONT file

*.{fastq,fastq.gz,fq,fq.gz,txt,txt.gz,bam}

Output

name:type
description
pattern

report_data

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*/*.data:file

Report data emitted from toulligqc

*.data

report_html

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*/*.html:file

Report data in html format

*.html

plots_html

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*/images/*.html:file

Plots emitted in html format

*.html

plotly_js

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*/images/plotly.min.js:file

Plots emitted from toulligqc

plotly.min.js

versions

versions.yml:file

File containing software versions

versions.yml

Tools

toulligqc
CECILL-2.1

A post sequencing QC tool for Oxford Nanopore sequencers