A post sequencing QC tool for Oxford Nanopore sequencers
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seq_summary
Basecaller sequencing summary source
*.txt
fastq
FASTQ file (necessary if no sequencing summary file)
*.{fq,fastq,fq.gz,fastq.gz}
bam
BAM file (necessary if no sequencing summary file)
*.bam
report_data
Report data emitted from toulligqc
*.data
report_html
Report data in html format
*.html
plots_html
Plots emitted in html format
plotly_js
Plots emitted from toulligqc
plotly.min.js
versions
File containing software versions
versions.yml
