Description

A post sequencing QC tool for Oxford Nanopore sequencers

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

ontfile (file)

Input ONT file

*.{fastq,fastq.gz,fq,fq.gz,txt,txt.gz,bam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

report_data (file)

Report data emitted from toulligqc

*.data

report_html (file)

Report data in html format

*.html

plots_html (file)

Plots emitted in html format

*.html

plotly_js (file)

Plots emitted from toulligqc

plotly.min.js

versions (file)

File containing software versions

versions.yml

Tools

toulligqc
CECILL-2.1

A post sequencing QC tool for Oxford Nanopore sequencers