Performs quality and adapter trimming on paired end and single end reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Input FastQ files of size 1 or 2 for single-end and paired-end data, respectively.
*.fastq.gz
trimmed_reads
The trimmed/modified paired end fastq reads
*.paired.trim*.fastq.gz
unpaired_reads
The trimmed/modified unpaired end fastq reads
*.unpaired.trim_*.fastq.gz
log
trimmomatic log file
*.log
summary
trimmomatic summary file of surviving and dropped reads
*.summary
versions
File containing software versions
versions.yml
A flexible read trimming tool for Illumina NGS data