Assembles a de novo transcriptome from RNAseq reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input fasta/fastq reads to be assembled into a transcriptome.
*.{fa,fasta,fq,fastq}
transcript_fasta
*.fa.gz
de novo assembled transcripts fasta file compressed
log
*.log
Log from trinity
versions_trinity
${task.process}
:string
The process the versions were collected from
trinity
The tool name
Trinity --version | grep 'Trinity version' | sed 's/.*Trinity-v//'
The command used to generate the version of the tool
versions
Trinity assembles transcript sequences from Illumina RNA-Seq data.
