Assembles a de novo transcriptome from RNAseq reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input fasta/fastq reads to be assembled into a transcriptome.
*.{fa,fasta,fq,fastq}
transcript_fasta{:bash}
*.fa.gz{:bash}
de novo assembled transcripts fasta file compressed
*.fa.gz
log{:bash}
*.log{:bash}
Log from trinity
*.log
versions_trinity{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
trinity{:bash}
The tool name
Trinity --version | grep 'Trinity version' | sed 's/.*Trinity-v//'{:bash}
The command used to generate the version of the tool
versions{:bash}
Trinity assembles transcript sequences from Illumina RNA-Seq data.
