Description

Assembles a de novo transcriptome from RNAseq reads

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

List of input fasta/fastq reads to be assembled into a transcriptome.

*.{fa|fasta|fq|fastq}

Output

name:type
description
pattern

transcript_fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fa.gz:file

de novo assembled transcripts fasta file compressed

*.fa.gz

log

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.log:file

Log from trinity

*.log

versions

versions.yml:file

File containing software versions

versions.yml

Tools

trinity
BSD-3-clause

Trinity assembles transcript sequences from Illumina RNA-Seq data.