Normalization of SVs into disjointed genomic regions
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1']
[ id:'sample1']
vcf{:bash}
:file
Input VCF file
*.{vcf,gz}
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
*.vcf{:bash}
Segmented VCF file
*.{vcf}
versions_truvari{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
truvari{:bash}
The name of the tool
truvari version | sed 's/Truvari v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Structural variant comparison tool for VCFs
