modules/trycycler_cluster

Cluster contigs from multiple assemblies by similarity

clusteralignmentfastqfastagenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/trycycler/cluster

Description

Cluster contigs from multiple assemblies by similarity

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`contigs:file`

Contigs file

`reads:file`

Long-read FASTQ file, optionally gzip compressed

Output

name:type

description

pattern

`cluster_dir`

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*:directory`

Output directory containing clustering results

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

trycycler
GPL v3

Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes

github.com/rrwick/Trycycler github.com/rrwick/Trycycler/wiki 10.1186/s13059-021-02483-z

modules/trycycler_cluster

Description

Input

meta:map

contigs:file

reads:file

Output

cluster_dir

meta:map

*:directory

versions

versions.yml:file

Tools

trycycler GPL v3

`meta:map`

`contigs:file`

`reads:file`

`cluster_dir`

`meta:map`

`*:directory`

`versions`

`versions.yml:file`

trycycler
GPL v3