Cluster contigs from multiple assemblies by similarity
meta
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads
Long-read FASTQ file, optionally gzip compressed
assemblies
Input assemblies whose contigs will be clustered
out_dir
Output directory for clustering results
cluster_dir
Output directory containing clustering results
versions
File containing software versions
versions.yml
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
