Cluster contigs from multiple assemblies by similarity
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
contigs{:bash}
:file
Contigs file
reads{:bash}
Long-read FASTQ file, optionally gzip compressed
cluster_dir{:bash}
*{:bash}
:directory
Output directory containing clustering results
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
