Cluster contigs from multiple assemblies by similarity
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
contigs
:file
Contigs file
reads
Long-read FASTQ file, optionally gzip compressed
cluster_dir
*
:directory
Output directory containing clustering results
versions_trycycler
${task.process}
:string
The name of the process
trycycler
The name of the tool
trycycler --version | sed 's/Trycycler v//'
:eval
The expression to obtain the version of the tool
versions
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
