Subsample a long-read sequencing fastq file for multiple assemblies
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads{:bash}
:file
Long-read FASTQ file, optionally gzip compressed
subreads{:bash}
*/*.fastq.gz{:bash}
Subsampled read sets
*.{fastq.gz}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
