Description

Remove lines from bed file that refer to off-chromosome locations.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bedgraph (file)

bedGraph file

*.{bedgraph}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bedgraph (file)

bedGraph file

*.{bedgraph}
included in
cutandrun hicar rnaseq rnasplice
maintainer
Github user drpatelh
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Remove lines from bed file that refer to off-chromosome locations.

http://hgdownload.cse.ucsc.edu/admin/exe