Description

Remove lines from bed file that refer to off-chromosome locations.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bedgraph:file

bedGraph file

*.{bedgraph}

sizes:file

Chromosome sizes file

Output

name:type
description
pattern

bedgraph

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bedGraph:file

bedGraph file

*.{bedgraph}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Remove lines from bed file that refer to off-chromosome locations.