Description

Convert a bedGraph file to bigWig format.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bedgraph (file)

bedGraph file

*.{bedGraph}

sizes (file)

chromosome sizes file

*.{sizes}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bigwig (file)

bigWig file

*.{bigWig}
included in
atacseq chipseq cutandrun hicar rnaseq rnasplice ssds
maintainer
Github user drpatelh
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert a bedGraph file to bigWig format.

http://hgdownload.cse.ucsc.edu/admin/exe genome.ucsc.edu/goldenPath/help/bigWig