Description

Convert file from bed to bigBed format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

bed file

*.{bed}

sizes (file)

chromosome sizes file

*.{sizes}

autosql (file)

autoSql file to describe the columns of the BED file

*.{as}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bigbed (file)

bigBed file

*.{bigBed}
maintainer
Github user drpatelh
get in touch
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Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert file from bed to bigBed format

http://hgdownload.cse.ucsc.edu/admin/exe genome.ucsc.edu/goldenPath/help/bigBed