Description

Convert file from bed to bigBed format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed{:bash}

:file

bed file

*.{bed}

sizes{:bash}

:file

chromosome sizes file

*.{sizes}

autosql{:bash}

:file

autoSql file to describe the columns of the BED file

*.{as}

Output

name:type
description
pattern

bigbed{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bigBed{:bash}

:file

bigBed file

*.{bigBed}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert file from bed to bigBed format