Description

Convert file from bed to bigBed format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed{:bash}

:file

bed file

*.{bed}

sizes{:bash}

:file

chromosome sizes file

*.{sizes}

autosql{:bash}

:file

autoSql file to describe the columns of the BED file

*.{as}

Output

name:type
description
pattern

bigbed{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bigBed{:bash}

:file

bigBed file

*.{bigBed}

versions_ucsc{:bash}

${task.process}{:bash}

:string

The name of the process

ucsc{:bash}

:string

The name of the tool

482{:bash}

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

ucsc{:bash}

:string

The name of the tool

482{:bash}

:string

The expression to obtain the version of the tool

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert file from bed to bigBed format