Description

compute average score of bigwig over bed file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

bed file

*.{bed}

bigwig (file)

bigwig file

*.{bigwig,bw}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tab (file)

tab file

*.{tab}
included in
hicar
maintainer
Github user jianhong
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Compute average score of big wig over each bed, which may have introns.

http://hgdownload.cse.ucsc.edu/admin/exe http://www.genome.ucsc.edu/goldenPath/help/bigWig