Description

compute average score of bigwig over bed file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gtf (file)

GTF file

*.{gtf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

genepred (file)

genepred file

*.{genepred}

refflat (file)

refflat file

*.{refflat}

versions (file)

File containing software versions

versions.yml
authors
Github user BarryDigby Github user anoronh4
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Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert GTF files to GenePred format

http://hgdownload.cse.ucsc.edu/admin/exe