convert between genome builds
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed
Browser Extensible Data (BED) file
*.{bed}
chain
Chain file
*.{chain,chain.gz}
versions
File containing software version
versions.yml
lifted
BED file containing successfully lifted variants
*.{lifted.bed}
unlifted
BED file containing variants that couldn’t be lifted
*.{unlifted.bed}
Move annotations from one assembly to another