convert between genome builds
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
Browser Extensible Data (BED) file
*.{bed}
chain{:bash}
Chain file
*.{chain,chain.gz}
lifted{:bash}
*.lifted.bed{:bash}
BED file containing successfully lifted variants
*.{lifted.bed}
unlifted{:bash}
*.unlifted.bed{:bash}
BED file containing variants that couldn’t be lifted
*.{unlifted.bed}
versions_ucsc{:bash}
${task.process}{:bash}
:string
The name of the process
ucsc{:bash}
The name of the tool
482{:bash}
The expression to obtain the version of the tool
versions{:bash}
Move annotations from one assembly to another
