convert between genome builds
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed:file
Browser Extensible Data (BED) file
*.{bed}
chain:file
Chain file
*.{chain,chain.gz}
lifted
*.lifted.bed:file
BED file containing successfully lifted variants
*.{lifted.bed}
unlifted
*.unlifted.bed:file
BED file containing variants that couldn’t be lifted
*.{unlifted.bed}
versions
versions.yml:file
File containing software version
versions.yml
Move annotations from one assembly to another
