Description

convert between genome builds

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Browser Extensible Data (BED) file

*.{bed}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

version (file)

File containing software version

versions.yml

lifted (file)

BED file containing successfully lifted variants

*.{lifted.bed}

unlifted (file)

BED file containing variants that couldn’t be lifted

*.{unlifted.bed}

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Move annotations from one assembly to another