Description

Convert ascii format wig file to binary big wig format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

wig{:bash}

:file

wig file

*.{wig}

sizes{:bash}

:file

Chromosome sizes file

Output

name:type
description
pattern

bw{:bash}

meta{:bash}

:file

bigwig file

*.{bw}

${prefix}.bw{:bash}

:file

bigwig file

*.{bw}

versions_ucsc{:bash}

${task.process}{:bash}

:string

The name of the process

ucsc{:bash}

:string

The name of the tool

482{:bash}

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

ucsc{:bash}

:string

The name of the tool

482{:bash}

:string

The expression to obtain the version of the tool

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert ascii format wig file (in fixedStep, variableStep or bedGraph format) to binary big wig format