modules/ucsc_wigtobigwig

Convert ascii format wig file to binary big wig format

wigbigwigucsc

https://github.com/nf-core/modules/[...]/modules/nf-core/ucsc/wigtobigwig

Description

Convert ascii format wig file to binary big wig format

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`wig:file`

wig file

*.{wig}

`sizes:file`

Chromosome sizes file

Output

name:type

description

pattern

`bw`

`meta:file`

bigwig file

*.{bw}

`*.bw:file`

bigwig file

*.{bw}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert ascii format wig file (in fixedStep, variableStep or bedGraph format) to binary big wig format

http://www.genome.ucsc.edu/goldenPath/help/bigWig

modules/ucsc_wigtobigwig

Description

Input

`meta:map`

`wig:file`

`sizes:file`

Output

`bw`

`meta:file`

`*.bw:file`

`versions`

`versions.yml:file`

Tools

ucsc
varies; see http://genome.ucsc.edu/license

included in

maintainers

get in touch

modules/ucsc_wigtobigwig

Description

Input

meta:map

wig:file

sizes:file

Output

bw

meta:file

*.bw:file

versions

versions.yml:file

Tools

ucsc varies; see http://genome.ucsc.edu/license

included in

maintainers

get in touch

`meta:map`

`wig:file`

`sizes:file`

`bw`

`meta:file`

`*.bw:file`

`versions`

`versions.yml:file`

ucsc
varies; see http://genome.ucsc.edu/license