modules/ucsc_wigtobigwig

Convert ascii format wig file to binary big wig format

wigbigwigucsc

https://github.com/nf-core/modules/[...]/modules/nf-core/ucsc/wigtobigwig

Description

Convert ascii format wig file to binary big wig format

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`wig`
`:file`

wig file

*.{wig}

`sizes`
`:file`

Chromosome sizes file

Output

name:type

description

pattern

`bw`

`meta`
`:file`

bigwig file

*.{bw}

`${prefix}.bw`
`:file`

bigwig file

*.{bw}

`versions_ucsc`

`${task.process}`
`:string`

The name of the process

`ucsc`
`:string`

The name of the tool

`482`
`:string`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`ucsc`
`:string`

The name of the tool

`482`
`:string`

The expression to obtain the version of the tool

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert ascii format wig file (in fixedStep, variableStep or bedGraph format) to binary big wig format

http://www.genome.ucsc.edu/goldenPath/help/bigWig

modules/ucsc_wigtobigwig

Description

Input

`meta`
`:map`

`wig`
`:file`

`sizes`
`:file`

Output

`bw`

`meta`
`:file`

`${prefix}.bw`
`:file`

`versions_ucsc`

`${task.process}`
`:string`

`ucsc`
`:string`

`482`
`:string`

Topics

`versions`

`${task.process}`
`:string`

`ucsc`
`:string`

`482`
`:string`

Tools

ucsc
varies; see http://genome.ucsc.edu/license

included in

maintainers

get in touch

modules/ucsc_wigtobigwig

Description

Input

meta:map

wig:file

sizes:file

Output

bw

meta:file

${prefix}.bw:file

versions_ucsc

${task.process}:string

ucsc:string

482:string

Topics

versions

${task.process}:string

ucsc:string

482:string

Tools

ucsc varies; see http://genome.ucsc.edu/license

included in

maintainers

get in touch

`meta`
`:map`

`wig`
`:file`

`sizes`
`:file`

`bw`

`meta`
`:file`

`${prefix}.bw`
`:file`

`versions_ucsc`

`${task.process}`
`:string`

`ucsc`
`:string`

`482`
`:string`

`versions`

`${task.process}`
`:string`

`ucsc`
`:string`

`482`
`:string`

ucsc
varies; see http://genome.ucsc.edu/license