Description

uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Map reads on genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

A fasta or fastq file of reads to align

*.{fa,fasta,fastq}

genome (file)

A fasta file of reference genome

*.{fa,fasta}

pickle (file)

Pickle files generated by uLTRA index

*.pickle

db (file)

Database generated by uLTRA index

*.db

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bam (file)

The aligned reads in bam format

*.bam
included in
isoseq
maintainer
Github user sguizard
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

ultra
GNU GPLV3

Splice aligner of long transcriptomic reads to genome.

github.com/ksahlin/uLTRA 10.1093/bioinformatics/btab540