Description

uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing genome information e.g. [ id:‘test’ ]

fasta{:bash}

:file

A fasta file of the genome to use as reference for mapping

*.{fasta, fa}

meta2{:bash}

:map

Groovy Map containing gtf information e.g. [ id:‘test’ ]

gtf{:bash}

:file

An annotation file of the reference genome in GTF format

*.gtf

Output

name:type
description
pattern

database{:bash}

meta{:bash}

:map

Groovy Map containing genome information e.g. [ id:‘test’ ]

*.db{:bash}

:file

Index database

*.db

pickle{:bash}

meta{:bash}

:map

Groovy Map containing genome information e.g. [ id:‘test’ ]

*.pickle{:bash}

:file

Index file

*.pickle

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

ultra
GNU GPLV3

Splice aligner of long transcriptomic reads to genome.

github.com/ksahlin/uLTRA 10.1093/bioinformatics/btab540
included in
isoseq
maintainer
Github user sguizard
get in touch
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