Description

uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment

Input

Name (Type)
Description
Pattern

fasta (file)

A fasta file of the genome to use as reference for mapping

*.{fasta, fa}

gtf (file)

An annotation file of the reference genome in GTF format

*.gtf

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

pickle (file)

Index files generated by uLTRA index

*.pickle

pickle (file)

database file generated by uLTRA index

*.db
included in
isoseq
maintainer
Github user sguizard
get in touch
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Tools

ultra
GNU GPLV3

Splice aligner of long transcriptomic reads to genome.

github.com/ksahlin/uLTRA 10.1093/bioinformatics/btab540