uLTRA aligner - A wrapper around minimap2 to improve small exon detection
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads{:bash}
:file
A fasta or fastq file of reads to align
*.{fasta,fastq}
meta2{:bash}
fasta{:bash}
fasta file of reference genome
*.fasta
meta3{:bash}
gtf{:bash}
Genome annotation file
*.gtf
sam{:bash}
*.sam{:bash}
The aligned reads in sam format
*.sam
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Splice aligner of long transcriptomic reads to genome.
