Description

Ultraplex is an all-in-one software package for processing and demultiplexing fastq files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Zipped FASTQ file

*.{fastq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Demultiplexed sample FASTQ files

*[!no_match].fastq.gz

no_match_fastq (file)

FASTQ file containing reads that could not be demultiplexed

*no_match.fastq.gz

report (file)

File containing demultiplexing log

*.log

versions (file)

File containing software versions

versions.yml
maintainers
Github user CharlotteAnne
Github user oscarwilkins
Github user chris-cheshire
Github user marc-jones
Github user iraiosub
Github user samirelanduk
get in touch
Ask a question on Slack Open an issue on GitHub

Tools