Group reads based on their UMI and mapping coordinates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM file containing reads to be deduplicated via UMIs.
*.{bam}
bai{:bash}
BAM index files corresponding to the input BAM file.
*.{bai}
create_bam{:bash}
:boolean
Whether or not to create a read group tagged BAM file.
get_group_info{:bash}
Whether or not to generate the flatfile describing the read groups, see docs for complete info of all columns
log{:bash}
*.log{:bash}
File with logging information
*.{log}
${prefix}.bam{:bash}
a read group tagged BAM file.
${prefix}.{bam}
tsv{:bash}
*.tsv{:bash}
Flatfile describing the read groups, see docs for complete info of all columns
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes
