Group reads based on their UMI and mapping coordinates
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam:file
BAM file containing reads to be deduplicated via UMIs.
*.{bam}
bai:file
BAM index files corresponding to the input BAM file.
*.{bai}
create_bam:boolean
Whether or not to create a read group tagged BAM file.
get_group_info:boolean
Whether or not to generate the flatfile describing the read groups, see docs for complete info of all columns
log
*.log:file
File with logging information
*.{log}
bam
${prefix}.bam:file
a read group tagged BAM file.
${prefix}.{bam}
tsv
*.tsv:file
Flatfile describing the read groups, see docs for complete info of all columns
*.{tsv}
versions
versions.yml:file
File containing software versions
versions.yml
UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes
