Description

Make the output from umi_tools dedup or group compatible with RSEM

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM file containing reads to be deduplicated via UMIs.

*.{bam}

bai (file)

BAM index files corresponding to the input BAM file.

*.{bai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

Prepared BAM file.

*.{bam}

log (file)

File with logging information

*.{log}

versions (file)

File containing software versions

versions.yml

Tools

umi_tools

UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes