Make the output from umi_tools dedup or group compatible with RSEM
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM file containing reads to be deduplicated via UMIs.
*.{bam}
bai{:bash}
BAM index files corresponding to the input BAM file.
*.{bai}
*.bam{:bash}
Prepared BAM file.
log{:bash}
*.log{:bash}
File with logging information
*.{log}
versions_umitools{:bash}
${task.process}{:bash}
:string
The name of the process
umitools{:bash}
The name of the tool
umi_tools --version | sed 's/UMI-tools version: //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes
