Assembles bacterial genomes
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
shortreads:file
List of input Illumina FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
longreads:file
List of input FastQ files of size 1, PacBio or Nanopore long reads.
scaffolds
*.scaffolds.fa.gz:file
Fasta file containing scaffolds
*.{scaffolds.fa.gz}
gfa
*.assembly.gfa.gz:file
gfa file containing assembly
*.{assembly.gfa.gz}
log
*.log:file
unicycler log file
*.{log}
versions
versions.yml:file
File containing software versions
versions.yml
Hybrid assembly pipeline for bacterial genomes
