Assembles bacterial genomes
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
shortreads
List of input Illumina FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
longreads
List of input FastQ files of size 1, PacBio or Nanopore long reads.
versions
File containing software versions
versions.yml
scaffolds
Fasta file containing scaffolds
*.{scaffolds.fa.gz}
gfa
gfa file containing assembly
*.{assembly.gfa.gz}
log
unicycler log file
*.{log}
Hybrid assembly pipeline for bacterial genomes
