Description

Module to run UniverSC an open-source pipeline to demultiplex and process single-cell RNA-Seq data

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

FASTQ or FASTQ.GZ file, list of 2 files for paired-end data

*.{fastq,fq,fastq.gz,fq.gz}

Output

Name (Type)
Description
Pattern

outs (file)

Files containing the outputs of Cell Ranger

sample-${meta.id}/outs/*

versions (file)

File containing software version

versions.yml
included in
scrnaseq
maintainers
Github user kbattenb
Github user tomkellygenetics
get in touch
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