Simple software to call UPD regions from germline exome/wgs trios.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
VCF file
*.{vcf,vcf.gz}
bed{:bash}
*.bed{:bash}
BED file
*.{bed}
versions_upd{:bash}
${task.process}{:bash}
:string
The name of the process
upd{:bash}
The name of the tool
upd --version 2>&1 | sed 's/upd, version //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
