The Java port of the VarDict variant caller
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bams
One or two BAM files. Supply two BAM files to run Vardict in paired mode.
*.bam
bais
Index/indices of the BAM file(s)
*.bai
bed
BED with the regions of interest
*.bed
meta2
Groovy Map containing fasta information e.g. [ id:‘test’, single_end
fasta
FASTA of the reference genome
*.{fa,fasta}
meta3
fasta_fai
The index of the FASTA of the reference genome
*.fai
versions
File containing software versions
versions.yml
vcf
VCF file output
*.vcf.gz
Java port of the VarDict variant discovery program
