Filtering, downsampling and profiling alignments in BAM/CRAM formats
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM/CRAM file
*.{bam,cram}
*.bam{:bash}
Filtered or downsampled BAM file
*.{bam}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Filtering and profiling of next-generational sequencing data using region-specific rules
