Filtering, downsampling and profiling alignments in BAM/CRAM formats
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM/CRAM file
*.{bam,cram}
bam
*.bam:file
Filtered or downsampled BAM file
*.{bam}
versions
versions.yml:file
File containing software versions
versions.yml
Filtering and profiling of next-generational sequencing data using region-specific rules
