Filtering, downsampling and profiling alignments in BAM/CRAM formats
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM/CRAM file
*.{bam,cram}
versions
File containing software versions
versions.yml
Filtered or downsampled BAM file
*.{bam}
Filtering and profiling of next-generational sequencing data using region-specific rules
