Filtering, downsampling and profiling alignments in BAM/CRAM formats
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM/CRAM file
*.{bam,cram}
*.bam
Filtered or downsampled BAM file
*.{bam}
versions_variant
${task.process}
:string
The name of the process
VariantBam
The name of the tool
1.4.4a
The expression to obtain the version of the tool
versions
Filtering and profiling of next-generational sequencing data using region-specific rules
