Description

A tool to create a Gemini-compatible DB file from an annotated VCF

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcf{:bash}

:file

VCF file

*.vcf.gz

ped{:bash}

:file

PED file

*.ped

Output

name:type
description
pattern

db{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.db{:bash}

:file

Gemini-compatible database file

*.db

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

vcf2db
MIT

Create a gemini-compatible database from a VCF