Description

A tool to create a Gemini-compatible DB file from an annotated VCF

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF file

*.vcf.gz

ped (file)

PED file

*.ped

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

db (file)

Gemini-compatible database file

*.db
maintainer
Github user nvnieuwk
get in touch
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Tools

vcf2db
MIT

Create a gemini-compatible database from a VCF

github.com/quinlan-lab/vcf2db