Description

A tool to create a Gemini-compatible DB file from an annotated VCF

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

vcf:file

VCF file

*.vcf.gz

ped:file

PED file

*.ped

Output

name:type
description
pattern

db

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.db:file

Gemini-compatible database file

*.db

versions

versions.yml:file

File containing software versions

versions.yml

Tools

vcf2db
MIT

Create a gemini-compatible database from a VCF