quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
query VCF file
*.{vcf, vcf.gz}
tbi
tabix index file for the query VCF
*.tbi
specific_resources
A list of sample specific reference files defined in toml config, must also include indices if bgzipped.
toml
configuration file with reference file basenames
*.toml
lua
Lua file for custom annotations
*.lua
resources
List of reference files defined in toml config, must also include indices if bgzipped.
*.vcf.gz
*.vcf.gz.tbi
versions_vcfanno
${task.process}
:string
The name of the process
vcfanno
The name of the tool
vcfanno 2>&1 | sed -n 's/.*version \([0-9.]\+\).*/\1/p'
:eval
The expression to obtain the version of the tool
versions
annotate a VCF with other VCFs/BEDs/tabixed files
