Description

quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcf:file

query VCF file

*.{vcf, vcf.gz}

tbi:file

tabix index file for the query VCF

*.tbi

specific_resources:map

A list of sample specific reference files defined in toml config, must also include indices if bgzipped.

toml:file

configuration file with reference file basenames

*.toml

lua:file

Lua file for custom annotations

*.lua

resources:map

List of reference files defined in toml config, must also include indices if bgzipped.

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.vcf:file

Annotated VCF file

*.vcf

versions

versions.yml:file

File containing software versions

versions.yml