quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
query VCF file
tabix index of query VCF - only needed if vcf is compressed
A list of sample specific reference files defined in toml config, must also include indices if bgzipped.
configuration file with reference file basenames
Lua file for custom annotations
List of reference files defined in toml config, must also include indices if bgzipped.
File containing software versions
Annotated VCF file
annotate a VCF with other VCFs/BEDs/tabixed files