modules/vcflib_vcfbreakmulti

If multiple alleles are specified in a single record, break the record into several lines preserving allele-specific INFO fields

vcflibvcfbreakmultiallele-specific

https://github.com/nf-core/modules/[...]/modules/nf-core/vcflib/vcfbreakmulti

Description

If multiple alleles are specified in a single record, break the record into several lines preserving allele-specific INFO fields

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`vcf`
`:file`

Compressed VCF file

*.{.vcf.gz,vcf}

`tbi`
`:file`

Index of VCF file

*.vcf.gz.tbi

Output

name:type

description

pattern

`vcf`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.vcf.gz`
`:file`

Compressed VCF file

*.vcf.gz

`versions_vcflib`

`${task.process}`
`:string`

The name of the process

`vcflib`
`:string`

The name of the tool

`1.0.14`
`:string`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`vcflib`
`:string`

The name of the tool

`1.0.14`
`:string`

The expression to obtain the version of the tool

Tools

vcflib
MIT

Command-line tools for manipulating VCF files

github.com/vcflib/vcflib github.com/vcflib/vcflib#USAGE 10.1101/2021.05.21.445151

modules/vcflib_vcfbreakmulti

Description

Input

`meta`
`:map`

`vcf`
`:file`

`tbi`
`:file`

Output

`vcf`

`meta`
`:map`

`*.vcf.gz`
`:file`

`versions_vcflib`

`${task.process}`
`:string`

`vcflib`
`:string`

`1.0.14`
`:string`

Topics

`versions`

`${task.process}`
`:string`

`vcflib`
`:string`

`1.0.14`
`:string`

Tools

vcflib
MIT

maintainer

get in touch

modules/vcflib_vcfbreakmulti

Description

Input

meta:map

vcf:file

tbi:file

Output

vcf

meta:map

*.vcf.gz:file

versions_vcflib

${task.process}:string

vcflib:string

1.0.14:string

Topics

versions

${task.process}:string

vcflib:string

1.0.14:string

Tools

vcflib MIT

maintainer

get in touch

`meta`
`:map`

`vcf`
`:file`

`tbi`
`:file`

`vcf`

`meta`
`:map`

`*.vcf.gz`
`:file`

`versions_vcflib`

`${task.process}`
`:string`

`vcflib`
`:string`

`1.0.14`
`:string`

`versions`

`${task.process}`
`:string`

`vcflib`
`:string`

`1.0.14`
`:string`

vcflib
MIT