Description

Command line tools for parsing and manipulating VCF files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test_sample_1’ ]

vcf (file)

VCF file

*.{vcf,vcf.gz}

tbi (file)

Index file

*.{tbi}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

vcf (file)

Filtered VCF file

*.{vcf.gz}

versions (file)

File containing software versions

versions.yml

Tools

vcflib
MIT

Command line tools for parsing and manipulating VCF files.