Description

Generates a VCF stream where AC and NS have been generated for each record using sample genotypes.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

Compressed VCF file

*.{.vcf.gz,vcf}

tbi (file)

Index of VCF file

*.vcf.gz.tbi

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

vcf (file)

Compressed VCF file

*.vcf.gz
included in
phaseimpute
maintainer
Github user atrigila
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