Description

Generates a VCF stream where AC and NS have been generated for each record using sample genotypes.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcf{:bash}

:file

Compressed VCF file

*.{.vcf.gz,vcf}

tbi{:bash}

:file

Index of VCF file

*.vcf.gz.tbi

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.vcf.gz{:bash}

:file

Compressed VCF file

*.vcf.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

included in
phaseimpute
maintainer
Github user atrigila
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