Description

write your description here

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input{:bash}

:list

One or more input graph files created with vg/construct

*.vg

Output

name:type
description
pattern

xg{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.xg{:bash}

:file

File containing a succinct, queryable version of the input graph(s) or read for GCSA or distance indexing

*.xg

vg_index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.vgi{:bash}

:file

An index of the graph(s) created when --index-sorted-vg is supplied.

*.vgi

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

vg
MIT

Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods.