Use vireo to perform donor deconvolution for multiplexed scRNA-seq data
meta:map
Groovy Map containing sample information e.g. [ id:'sample1']
[ id:'sample1']
cell_data:file
The cell genotype file in VCF format or cellSNP folder with sparse matrices.
*.vcf|*/
n_donor:integer
Number of donors to demultiplex.
donor_file:file
The optional donor genotype file in VCF format.
*.vcf
vartrix_data:file
The optional cell genotype files in vartrix outputs.
summary
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
*_summary.tsv:file
Summary tsv file of deconvolution result.
*_summary.tsv
donor_ids
*_donor_ids.tsv:file
Donor assignment with detailed statistics.
*_donor_ids.tsv
prob_singlets
*_prob_singlet.tsv.gz:file
contains probability of classifing singlets
*_prob_singlet.tsv.gz
prob_doublets
*_prob_doublet.tsv.gz:file
contains probability of classifing doublets
*_prob_doublet.tsv.gz
versions
versions.yml:file
File containing software versions
versions.yml
vireoSNP - donor deconvolution for multiplexed scRNA-seq data
