Use vireo to perform donor deconvolution for multiplexed scRNA-seq data
meta
Groovy Map containing sample information e.g. [ id:'sample1']
[ id:'sample1']
cell_data
The cell genotype file in VCF format or cellSNP folder with sparse matrices.
*.vcf|*/
n_donor
Number of donors to demultiplex.
donor_file
The optional donor genotype file in VCF format.
*.vcf
vartrix_data
The optional cell genotype files in vartrix outputs.
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
versions
File containing software versions
versions.yml
summary
Summary tsv file of deconvolution result.
*_summary.tsv
donor_ids
Donor assignment with detailed statistics.
*_donor_ids.tsv
prob_singlets
contains probability of classifing singlets
*_prob_singlet.tsv.gz
prob_doublets
contains probability of classifing doublets
*_prob_doublet.tsv.gz
vireoSNP - donor deconvolution for multiplexed scRNA-seq data
