Description

Extracting sequences that were unbinnned by vRhyme into a FASTA file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file containing contigs/scaffolds input into vRhyme

*.{fasta,fna,fa}

membership (file)

TSV file containing information regarding which bins input sequences were placed information

*.{tsv}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

unbinnned_sequences (file)

FASTA file containing sequences unbinned by vRhyme

*_unbinned_sequences.fasta
author
Github user CarsonJM
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Tools

vrhyme
GPL v3 license', 'GPL v3

vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).

github.com/AnantharamanLab/vRhyme 10.1093/nar/gkac341