Extracting sequences that were unbinnned by vRhyme into a FASTA file
Input
name:type
description
pattern
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
membership:file
TSV file containing information regarding which bins input sequences were placed information
*.{tsv}
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
fasta:file
FASTA file containing contigs/scaffolds input into vRhyme
*.{fasta,fna,fa}
Output
name:type
description
pattern
unbinned_sequences
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*_unbinned_sequences.fasta:file
FASTA file containing unbinned sequences
*_unbinned_sequences.fasta
versions
versions.yml:file
File containing software versions
versions.yml
Tools
vrhyme
GPL v3 license GPL v3
vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).
