Linking bins output by vRhyme to create one sequences per bin
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’ ]
bins
:directory
Directory file containing bin FASTA files output by vRhyme (each bin having multiple sequences)
Output
name:type
description
pattern
linked_bins
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*_linked_bins.fasta
:file
FASTA file containing all bins that have been linked by N’s
*_linked_bins.fasta
versions_vrhyme
${task.process}
:string
The name of the process
vrhyme
:string
The name of the tool
vRhyme --version 2>&1 | sed 's/^.*vRhyme v//; s/Using.*\$//'
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
vrhyme
:string
The name of the tool
vRhyme --version 2>&1 | sed 's/^.*vRhyme v//; s/Using.*\$//'
:eval
The expression to obtain the version of the tool
Tools
vrhyme
GPL v3 licenseGPL v3
vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).
