Description

Linking bins output by vRhyme to create one sequences per bin

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bins (directory)

Directory file containing bin FASTA files output by vRhyme (each bin having multiple sequences)

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

linked_bins (file)

FASTA file containing all bins that have been linked by N’s

*_linked_bins.fasta
author
Github user CarsonJM
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Tools

vrhyme
GPL v3 license', 'GPL v3

vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).

github.com/AnantharamanLab/vRhyme 10.1093/nar/gkac341