Description

Linking bins output by vRhyme to create one sequences per bin

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bins:directory

Directory file containing bin FASTA files output by vRhyme (each bin having multiple sequences)

Output

name:type
description
pattern

linked_bins

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*_linked_bins.fasta:file

FASTA file containing all bins that have been linked by N’s

*_linked_bins.fasta

versions

versions.yml:file

File containing software versions

versions.yml

Tools

vrhyme
GPL v3 license GPL v3

vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).