Description

decomposes multiallelic variants into biallelic in a VCF file.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

vcf (file)

The VCF file to decompose

*.vcf(.gz)?

intervals (file)

The intervals of the variants of decompose

*.bed

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

vcf (file)

The decomposed VCF file

*.vcf.gz

Tools

vt
MIT

A tool set for short variant discovery in genetic sequence data