Description

decomposes multiallelic variants into biallelic in a VCF file.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

vcf:file

The VCF file to decompose

*.vcf(.gz)?

intervals:file

The intervals of the variants of decompose

*.bed

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.vcf.gz:file

The decomposed VCF file

*.vcf.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

vt
MIT

A tool set for short variant discovery in genetic sequence data